Package: AbSolution 1.0.2

Rodrigo García-Valiente

AbSolution: Interactive Feature-Based Analysis of AIRR-Seq Data

An interactive framework for the exploration and analysis of adaptive immune receptor repertoire sequencing (AIRR-seq) data. It enables large-scale computation and integrated analysis of sequence-derived features, including physicochemical properties, amino acid descriptor sets, sequence motifs, compositional patterns, and somatic hypermutation metrics. The application supports multiscale analysis across sequences, clones, and repertoires, with interactive visualizations and statistical feature selection. 'AbSolution' also facilitates reproducible research by enabling structured export of data, code, parameters, and computational environments. See <https://github.com/EDS-Bioinformatics-Laboratory/AbSolution> for more details.

Authors:Rodrigo García-Valiente [cre, aut], Charisios Triantafyllou [aut], Antoine van Kampen [aut, ths]

AbSolution_1.0.2.tar.gz
AbSolution_1.0.2.zip(r-4.7-any)AbSolution_1.0.2.zip(r-4.6-any)AbSolution_1.0.2.zip(r-4.5-any)
AbSolution_1.0.2.tgz(r-4.6-any)AbSolution_1.0.2.tgz(r-4.5-any)
AbSolution_1.0.2.tar.gz(r-4.7-any)AbSolution_1.0.2.tar.gz(r-4.6-any)
AbSolution_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
AbSolution/json (API)

# Install 'AbSolution' in R:

install.packages('AbSolution', repos = c('https://eds-bioinformatics-laboratory.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/eds-bioinformatics-laboratory/absolution/issues

Pkgdown/docs site:https://eds-bioinformatics-laboratory.github.io

On CRAN:

airrseq encore reproducibility research

4.95 score 3 stars 6 scripts 706 downloads 14 exports 203 dependencies

Last updated from:1e4f9c4485. Checks:2 ERROR, 7 OK. Indexed: yes.

Target	Result	Time
linux-devel	ERROR	298
source / vignettes	OK	487
linux-release	ERROR	264
macos-release	OK	246
macos-oldrel	OK	281
windows-devel	OK	227
windows-release	OK	207
windows-oldrel	OK	212
wasm-release	OK	199

Exports:Ab_palette big_PCA calculate_clone draw_feature_violinplot draw_sharedclonesplot draw_upsetplot draw_violinplots Feature__dataset Feature_1 filter_merged merge_FBMs parse_AIRRSeq_file run_app validate_before_run

Dependencies:ade4 airr alakazam ape askpass assertthat attachment attempt backports base64enc benchmarkme benchmarkmeData BH bigassertr bigparallelr bigstatsr billboarder BiocGenerics BiocParallel Biostrings bit bit64 bitops blob brew bs4Dash bslib cachem callr checkmate cigarillo cli clipr codetools colourpicker commonmark config cowplot cpp11 crayon credentials crosstalk curl d3r dashboardthemes data.table DBI desc digest dockerfiler doParallel dplyr DT evaluate farver fastmap ff flock fontawesome foreach formatR fresh fs futile.logger futile.options generics GenomicAlignments GenomicRanges gert ggplot2 gitcreds glue golem gridExtra gtable here highr hms htmltools htmlwidgets httpuv httr httr2 igraph ini IRanges isoband iterators jquerylib jsonlite knitr labeling lambda.r later lattice lazyeval learnr lifecycle litedown magrittr markdown MASS Matrix memoise mime miniUI nlme openssl otel pak parallelly Peptides pillar pixmap pkgbuild pkgconfig pkgload plotly png prettyunits processx progress promises ps purrr pwalign R.cache R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen RcppTOML rdtools reactable reactR readr remotes renv reticulate RhpcBLASctl Rhtslib rlang rmarkdown rmio roxygen2 rprojroot Rsamtools RSpectra RSQLite rstudioapi S4Vectors S7 sass scales scrypt segmented Seqinfo seqinr shiny shinycssloaders shinyFiles shinyjs shinymanager shinymeta shinythemes shinyWidgets snow sortable sourcetools sp stringdist stringi stringr styler sunburstR sys tibble tidyr tidyselect tinytex tzdb umap upsetjs usethis utf8 vctrs viridis viridisLite vroom waiter whisker withr xfun xml2 xtable XVector yaml zip

AbSolution

Rendered fromAbSolution.Rmdusingknitr::rmarkdown

Last update: 2026-04-05
Started: 2026-04-05

Help page	Topics
Run the AbSolution Shiny Application Launches the interactive AbSolution Shiny application for exploring B-cell and T-cell receptor repertoire data. The application provides tools for loading AIRR-formatted datasets, inspecting sequence characteristics, visualizing clonotype distributions, and generating summary reports.	run_app

Package: AbSolution 1.0.2

AbSolution: Interactive Feature-Based Analysis of AIRR-Seq Data

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